io_helper.h File Reference

#include <string>
#include <sstream>
#include <iostream>
#include <iomanip>
#include <cstdio>
#include <errno.h>
#include <queue>
#include <algorithm>
#include <cstring>

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Classes
class	IOHelper< keyType, valueType >
	interface for converting a key from its raw format to a keyTypeype. Split key into groups. More...
class	FileReader< keyType, valueType >
class	ConstantLengthKmerHelper< keyType, valueType >
	IOHelper for Constant-Length Kmers. More...
class	KmerFileReader< keyType, valueType >
struct	KVpair< keyType, valueType >
class	compressFileReader< keyType, valueType >
class	MultivalueFileReaderWriter< keyType, valueType >
class	KmerReader< keyType >
class	BinaryKmerReader< KVpair >
class	BinaryKmerWriter< KVpair >
class	SortedKmerTxtReader< keyType >
	read kmer from unsorted txt file and sort . More...
class	taxoTreeBuilder< keyType, valueType >

Functions
std::string	human (uint64_t word)
	convert a 64-bit Integer to human-readable format in K/M/G. e.g, 102400 is converted to "100K".
std::vector< std::string >	split (const char *str, char deli)
	split a c-style string with delimineter chara.
template<typename keyType , typename valueType >
struct KVpair	__attribute__ ((packed))
bool friend	operator< (const KVpair &a, const KVpair &b)

Variables
keyType	k
valueType	v
compressFileReader	__attribute__

Detailed Description

Contains IO utilities.