BinaryKmerReader | |
BinaryKmerWriter | |
compressFileReader | |
ConstantLengthKmerHelper | IOHelper for Constant-Length Kmers |
DisjointSet | Disjoint Set data structure. Helps to test the acyclicity of the graph during construction |
FileReader | |
Hasher32 | A hash function that hashes keyType to uint32_t. When SSE4.2 support is found, use sse4.2 instructions, otherwise use default hash function std::hash |
IOHelper | Interface for converting a key from its raw format to a keyTypeype. Split key into groups |
KmerFileReader | |
KmerReader | |
KVpair | |
MulOth | Describes the data structure Grouped l-Othello. It classifies keys of keyType into 2^L classes. The keys are first classifed into groups, each group is then maintained by one l-Othello |
MulOthIndex | MulOthIndex is a extended version of OthelloIndex, it supports more than 2^29 keys. The keys are first classifed into groups, each group is then maintained by one OthelloIndex |
MultivalueFileReaderWriter | |
Othello | Describes the data structure l-Othello. It classifies keys of keyType into 2^L classes |
OthelloIndex | OthelloIndex is a data structure that stores a minimum perfect hash function. For n keys, the query value of keys range in [0..n-1] Query always returns uint32_t |
SortedKmerTxtReader | Read kmer from unsorted txt file and sort |
taxoTreeBuilder |